A multiobjective optimization approach to statistical mechanics

Optimization problems have been the subject of statistical physics approximations. A specially relevant and general scenario is provided by optimization methods considering tradeoffs between cost and efficiency, where optimal solutions involve a compromise between both. The theory of Pareto (or multi objective) optimization provides a general framework to explore these problems and find the space of possible solutions compatible with the underlying tradeoffs, known as the {\em Pareto front}. Conflicts between constraints can lead to complex landscapes of Pareto optimal solutions with interesting implications in economy, engineering, or evolutionary biology. Despite their disparate nature, here we show how the structure of the Pareto front uncovers profound universal features that can be understood in the context of thermodynamics. In particular, our study reveals that different fronts are connected to different classes of phase transitions, which we can define robustly, along with critical points and thermodynamic potentials. These equivalences are illustrated with classic thermodynamic examples.Comment: 14 pages, 8 figure

In silico transitions to multicellularity

The emergence of multicellularity and developmental programs are among the major problems of evolutionary biology. Traditionally, research in this area has been based on the combination of data analysis and experimental work on one hand and theoretical approximations on the other. A third possibility is provided by computer simulation models, which allow to both simulate reality and explore alternative possibilities. These in silico models offer a powerful window to the possible and the actual by means of modeling how virtual cells and groups of cells can evolve complex interactions beyond a set of isolated entities. Here we present several examples of such models, each one illustrating the potential for artificial modeling of the transition to multicellularity.Comment: 21 pages, 10 figures. Book chapter of Evolutionary transitions to multicellular life (Springer

Synthetic Turing protocells: vesicle self-reproduction through symmetry-breaking instabilities

The reproduction of a living cell requires a repeatable set of chemical events to be properly coordinated. Such events define a replication cycle, coupling the growth and shape change of the cell membrane with internal metabolic reactions. Although the logic of such process is determined by potentially simple physico-chemical laws, the modeling of a full, self-maintained cell cycle is not trivial. Here we present a novel approach to the problem which makes use of so called symmetry breaking instabilities as the engine of cell growth and division. It is shown that the process occurs as a consequence of the breaking of spatial symmetry and provides a reliable mechanism of vesicle growth and reproduction. Our model opens the possibility of a synthetic protocell lacking information but displaying self-reproduction under a very simple set of chemical reactions

La pandemia de gripe: una amenaza global

Pocos virus se han cobrado en el pasado un número tan alto de víctimas como la gripe. La posibilidad de una nueva pandemia ha generado una alerta más que justificada tanto a nivel social como en términos de su posible impacto en las economías de todo el mundo. La Organización Mundial de la Salud ha señalado que sólo 40 países del mundo han desarrollado planes de prevención contra la pandemia de gripe. Sin embargo, la gripe de 1918 y otras pandemias fueron efectivas en gran medida debido a la falta de previsión. Esta situación puede evitarse en esta ocasión, y una parte importante de lo efectiva que sea la lucha contra la pandemia surgirá de una información eficiente y coordinada durante las fases iniciales. No menos importante es ser conscientes del carácter global del fenómeno y que por lo tanto hay que mirar algo más allá de lo puramente doméstico

Minimal model of self-replicating nanocells: a physically embodied information-free scenario

The building of minimal self-reproducing systems with a physical embodiment (generically called protocells) is a great challenge, with implications for both theory and applied sciences. Although the classical view of a living protocell assumes that it includes information-carrying molecules as an essential ingredient, a dividing cell-like structure can be built from a metabolism-container coupled system, only. An example of such a system, modeled with dissipative particle dynamics, is presented here. This article demonstrates how a simple coupling between a precursor molecule and surfactant molecules forming micelles can experience a growth-division cycle in a predictable manner, and analyzes the influence of crucial parameters on this replication cycle. Implications of these results for origins of cellular life and living technology are outlined.Comment: 9 pages, 10 figure